If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ), 'gf_id' => 'HOM05D000998', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000998' ), 'data_identifier' => 'HOM05D000998', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000998', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11940' => 'bna', 'A03p56100' => 'bna', 'A04p11520' => 'bna', 'A06p10780' => 'bna', 'A08p27130' => 'bna', 'A09p61830' => 'bna', 'Aa31LG1G360' => 'aar', 'Aa31LG7G12280' => 'aar', 'Aa31LG7G8900' => 'aar', 'Aa31LG9G16980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3908' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1625' => 'aag', 'Actinidia04768' => 'ach', 'Actinidia14843' => 'ach', 'Actinidia18120' => 'ach', 'Actinidia32861' => 'ach', 'Actinidia34055' => 'ach', 'Actinidia34111' => 'ach', 'Actinidia36306' => 'ach', 'Ah.02g127230' => 'amhyb', 'Ah.07g207230' => 'amhyb', 'Ah.10g037490' => 'amhyb', 'AL1G26740' => 'aly', 'AL1G39680' => 'aly', 'AL7G27530' => 'aly', 'AL7G51910' => 'aly', 'Aqoxy3G00379' => 'aox', 'Aqoxy3G03881' => 'aox', 'Aqoxy3G03887' => 'aox', 'Aqoxy3G04106' => 'aox', 'Aqoxy3G04107' => 'aox', 'Aqoxy3G04110' => 'aox', 'Aqoxy7G00362' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QAD3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3C34JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5K62BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63EJDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99ANZ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB9QTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWJ5NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1IFW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA0JIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRYV2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLAX2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV992X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2LC7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXRC7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGEP0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGDM8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHAH6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6M3VX' => 'arhy', 'AT1G14730' => 'ath', 'AT1G26100' => 'ath', 'AT4G25570' => 'ath', 'AT5G38630' => 'ath', 'ATR0598G209' => 'atr', 'ATR0598G287' => 'atr', 'ATR0680G073' => 'atr', 'ATR0684G182' => 'atr', 'ATR0684G195' => 'atr', 'ATR0684G218' => 'atr', 'Atru.chr1.460' => 'acertr', 'Atru.chr8.802' => 'acertr', 'AUR62008959' => 'cqu', 'AUR62014149' => 'cqu', 'AUR62014544' => 'cqu', 'AUR62015987' => 'cqu', 'AUR62021195' => 'cqu', 'AUR62038492' => 'cqu', 'AUR62040071' => 'cqu', 'BcaB02g06544' => 'bca', 'BcaB03g12084' => 'bca', 'BcaB03g14053' => 'bca', 'BcaB05g21900' => 'bca', 'BcaB05g21944' => 'bca', 'BcaB06g27234' => 'bca', 'BcaC02g09660' => 'bca', 'BcaC03g14547' => 'bca', 'BcaC05g25392' => 'bca', 'BcaC06g32800' => 'bca', 'BcaC06g35187' => 'bca', 'BcaC07g41542' => 'bca', 'BcaC09g50756' => 'bca', 'BolC1t02036H' => 'bol', 'BolC2t08129H' => 'bol', 'BolC3t19571H' => 'bol', 'BolC4t26109H' => 'bol', 'BolC5t30011H' => 'bol', 'BolC7t42398H' => 'bol', 'BolC7t45928H' => 'bol', 'BolC8t52100H' => 'bol', 'BraA02t06258Z' => 'bra', 'BraA03t14683Z' => 'bra', 'BraA04t16817Z' => 'bra', 'BraA06t24256Z' => 'bra', 'BraA08t34658Z' => 'bra', 'BraA09t41551Z' => 'bra', 'C01p21120' => 'bna', 'C02p19940' => 'bna', 'C03p72730' => 'bna', 'C04p45260' => 'bna', 'C05p12680' => 'bna', 'C07p54430' => 'bna', 'C08p45470' => 'bna', 'CAN.G184.76' => 'can', 'CAN.G282.110' => 'can', 'CAN.G490.28' => 'can', 'CAN.G93.34' => 'can', 'CANSAT21G0217' => 'cansat', 'CANSAT21G1019' => 'cansat', 'CANSAT64G0428' => 'cansat', 'CANSAT64G1697' => 'cansat', 'CANSAT78G0014' => 'cansat', 'CANSAT78G2292' => 'cansat', 'CARHR015260' => 'chi', 'CARHR025830' => 'chi', 'CARHR214070' => 'chi', 'CARHR232990' => 'chi', 'CARHR265250' => 'chi', 'Carub.0001s1451' => 'cru', 'Carub.0001s2487' => 'cru', 'Carub.0007s1541' => 'cru', 'Carub.0007s3723' => 'cru', 'Carub.0008s1237' => 'cru', 'Ca_10772_v3' => 'car', 'Ca_18181_v3' => 'car', 'Ca_26251_v3' => 'car', 'Ca_27616_v3' => 'car', 'CBR_g3588' => 'cbr', 'Cc00_g32970' => 'ccan', 'Cc00_g33990' => 'ccan', 'Cc02_g03010' => 'ccan', 'Cc07_g05050' => 'ccan', 'Cc11_g05920' => 'ccan', 'Cc11_g05930' => 'ccan', 'Cc11_g10730' => 'ccan', 'CDE06G2025' => 'cde', 'CDE07G0105' => 'cde', 'CDE07G1506' => 'cde', 'CDE09G0178' => 'cde', 'CDE11G0628' => 'cde', 'Cfa007955' => 'cfa', 'Cfa008317' => 'cfa', 'Cfa015062' => 'cfa', 'Cfa018645' => 'cfa', 'Ciclev10005795m.g' => 'ccl', 'Ciclev10012646m.g' => 'ccl', 'Ciclev10016590m.g' => 'ccl', 'Ciclev10017511m.g' => 'ccl', 'Ciclev10032628m.g' => 'ccl', 'CiPaw.03G106100' => 'cil', 'CiPaw.04G039900' => 'cil', 'CiPaw.05G188600' => 'cil', 'CiPaw.06G059500' => 'cil', 'CiPaw.15G002500' => 'cil', 'ClCG01G006750' => 'cla', 'ClCG05G023100' => 'cla', 'ClCG07G006790' => 'cla', 'ClCG09G012960' => 'cla', 'ClCG11G005300' => 'cla', 'COL.COLO4_07857' => 'col', 'COL.COLO4_14307' => 'col', 'COL.COLO4_16200' => 'col', 'COL.COLO4_27595' => 'col', 'COL.COLO4_27596' => 'col', 'Cpa.g.sc1.232' => 'cpa', 'Cpa.g.sc107.50' => 'cpa', 'Cpa.g.sc2.138' => 'cpa', 'Cpa.g.sc2.139' => 'cpa', 'Cpa.g.sc818.1' => 'cpa', 'Cre13.g586600' => 'cre', 'CsaV3_3G049920' => 'csa', 'CsaV3_5G015390' => 'csa', 'CsaV3_5G027800' => 'csa', 'CsaV3_5G033890' => 'csa', 'CsaV3_5G039070' => 'csa', 'CSS0003466' => 'camsi', 'CSS0004335' => 'camsi', 'CSS0008605' => 'camsi', 'CSS0027725' => 'camsi', 'CSS0031162' => 'camsi', 'CSS0046194' => 'camsi', 'CSS0049198' => 'camsi', 'CSS0050401' => 'camsi', 'DCAR_007222' => 'dca', 'DCAR_010973' => 'dca', 'DCAR_018197' => 'dca', 'DCAR_023546' => 'dca', 'DCAR_026816' => 'dca', 'DCAR_026817' => 'dca', 'Dinv05680' => 'din', 'Dinv05682' => 'din', 'Dinv14376' => 'din', 'Dinv16517' => 'din', 'Dinv28444' => 'din', 'Dinv33925' => 'din', 'Dinv34856' => 'din', 'Duzib084G1300' => 'dzi', 'Duzib138G1166' => 'dzi', 'Duzib196G0002' => 'dzi', 'Duzib205G0285' => 'dzi', 'Duzib248G0404' => 'dzi', 'Duzib251G0175' => 'dzi', 'Duzib251G0226' => 'dzi', 'Duzib251G0535' => 'dzi', 'ECA234G3085' => 'eca', 'ECA234G4811' => 'eca', 'ECA238G4547' => 'eca', 'ECA238G4827' => 'eca', 'ECA246G3569' => 'eca', 'EL10Ac2g04615' => 'bvu', 'EL10Ac3g05645' => 'bvu', 'EL10Ac6g14518' => 'bvu', 'EL10Ac7g17039' => 'bvu', 'Eucgr.A02792' => 'egr', 'Eucgr.B02661' => 'egr', 'Eucgr.G02076' => 'egr', 'Eucgr.G02359' => 'egr', 'Eucgr.I02130' => 'egr', 'Eucgr.J01463' => 'egr', 'FAN01G1083' => 'fan', 'FAN02G0244' => 'fan', 'FAN03G0080' => 'fan', 'FAN03G0780' => 'fan', 'FAN06G3055' => 'fan', 'FAN06G4455' => 'fan', 'FAN07G1726' => 'fan', 'FAN07G2313' => 'fan', 'FAN07G2702' => 'fan', 'FAN09G2744' => 'fan', 'FAN10G2288' => 'fan', 'FAN12G0458' => 'fan', 'FAN12G1316' => 'fan', 'FAN12G2134' => 'fan', 'FAN14G3581' => 'fan', 'FAN17G0560' => 'fan', 'FAN17G1278' => 'fan', 'FAN17G3094' => 'fan', 'FAN22G0696' => 'fan', 'FAN22G0956' => 'fan', 'FAN22G1316' => 'fan', 'FvH4_4g28220' => 'fve', 'FvH4_4g33090' => 'fve', 'FvH4_6g45440' => 'fve', 'FvH4_7g29440' => 'fve', 'Glyma.01G089700' => 'gma', 'Glyma.02G101300' => 'gma', 'Glyma.05G138800' => 'gma', 'Glyma.07G174600' => 'gma', 'Glyma.08G094000' => 'gma', 'Glyma.10G236200' => 'gma', 'Glyma.19G044200' => 'gma', 'Glyma.20G012400' => 'gma', 'Glyma.20G012500' => 'gma', 'Glyma.20G158300' => 'gma', 'Gohir.A03G112500' => 'ghi', 'Gohir.A07G072700' => 'ghi', 'Gohir.A08G099400' => 'ghi', 'Gohir.A09G181200' => 'ghi', 'Gohir.A12G172100' => 'ghi', 'Gohir.A13G029600' => 'ghi', 'Gohir.D02G137050' => 'ghi', 'Gohir.D07G077200' => 'ghi', 'Gohir.D08G110700' => 'ghi', 'Gohir.D12G174500' => 'ghi', 'Gohir.D13G027900' => 'ghi', 'Gorai.001G081800' => 'gra', 'Gorai.004G118600' => 'gra', 'Gorai.005G153100' => 'gra', 'Gorai.008G187200' => 'gra', 'Gorai.013G031900' => 'gra', 'GSVIVG01011605001' => 'vvi', 'GSVIVG01011606001' => 'vvi', 'GSVIVG01011607001' => 'vvi', 'GSVIVG01011969001' => 'vvi', 'GSVIVG01028979001' => 'vvi', 'GSVIVG01036452001' => 'vvi', 'HanXRQChr08g0224831' => 'han', 'HanXRQChr08g0224841' => 'han', 'HanXRQChr10g0283771' => 'han', 'HanXRQChr14g0452301' => 'han', 'HanXRQChr14g0462441' => 'han', 'HanXRQChr16g0527291' => 'han', 'HanXRQChr17g0551321' => 'han', 'HanXRQChr17g0566111' => 'han', 'Haze_10829' => 'cav', 'Haze_13716' => 'cav', 'Haze_14114' => 'cav', 'Haze_14120' => 'cav', 'Haze_17424' => 'cav', 'Hma1.2p1_0037F.1_g023810' => 'hma', 'Hma1.2p1_0136F.1_g062060' => 'hma', 'Hma1.2p1_0270F.1_g108040' => 'hma', 'Hma1.2p1_0406F.1_g145960' => 'hma', 'Hma1.2p1_1450F.1_g284250' => 'hma', 'HPP92_004245' => 'vpl', 'HPP92_004254' => 'vpl', 'HPP92_005062' => 'vpl', 'HPP92_020264' => 'vpl', 'HPP92_021840' => 'vpl', 'Hund04738' => 'sun', 'Hund05617' => 'sun', 'Hund05773' => 'sun', 'Hund11749' => 'sun', 'Hund13737' => 'sun', 'Hund13738' => 'sun', 'Hund16115' => 'sun', 'Lalb_Chr03g0034541' => 'lal', 'Lalb_Chr06g0161131' => 'lal', 'Lalb_Chr06g0174701' => 'lal', 'Lalb_Chr13g0293661' => 'lal', 'Lalb_Chr17g0341851' => 'lal', 'Lalb_Chr21g0317961' => 'lal', 'Lj1A997T38' => 'lonja', 'Lj2g0001668' => 'lja', 'Lj2g0009892' => 'lja', 'Lj2g0010956' => 'lja', 'Lj2g0014622' => 'lja', 'Lj3A1021T38' => 'lonja', 'Lj3A860T47' => 'lonja', 'Lj4A131T28' => 'lonja', 'Lj4g0026264' => 'lja', 'Lj5g0009646' => 'lja', 'Lj6A732T71' => 'lonja', 'Lj6P732T46' => 'lonja', 'Lj7A9T87' => 'lonja', 'Lsat_1_v5_gn_2_131981' => 'lsa', 'Lsat_1_v5_gn_2_86700' => 'lsa', 'Lsat_1_v5_gn_3_57420' => 'lsa', 'Lsat_1_v5_gn_3_58321' => 'lsa', 'Lsat_1_v5_gn_3_94400' => 'lsa', 'Lsat_1_v5_gn_4_22960' => 'lsa', 'Lsat_1_v5_gn_5_59840' => 'lsa', 'Lsat_1_v5_gn_8_34840' => 'lsa', 'Lsat_1_v5_gn_8_34860' => 'lsa', 'Manes.01G107700' => 'mes', 'Manes.06G073400' => 'mes', 'Manes.06G073500' => 'mes', 'Manes.06G146900' => 'mes', 'Manes.17G086900' => 'mes', 'Manes.17G087000' => 'mes', 'Mapoly0007s0088' => 'mpo', 'MBI09_g19494_MAGBIO' => 'mbi', 'MBI09_g44445_MAGBIO' => 'mbi', 'MBI10_g08561_MAGBIO' => 'mbi', 'MBI10_g35506_MAGBIO' => 'mbi', 'MBI16_g23750_MAGBIO' => 'mbi', 'MBI17_g08180_MAGBIO' => 'mbi', 'MBI17_g47088_MAGBIO' => 'mbi', 'MBI19_g10906_MAGBIO' => 'mbi', 'MBI19_g10907_MAGBIO' => 'mbi', 'MD01G1200500' => 'mdo', 'MD01G1200600' => 'mdo', 'MD07G1268400' => 'mdo', 'MD09G1083000' => 'mdo', 'MD13G1016600' => 'mdo', 'MD13G1016700' => 'mdo', 'MD13G1048100' => 'mdo', 'MD16G1014500' => 'mdo', 'MD16G1014600' => 'mdo', 'MD17G1073300' => 'mdo', 'Medtr1g033360' => 'mtr', 'Medtr1g033390' => 'mtr', 'Medtr1g100643' => 'mtr', 'Medtr5g053250' => 'mtr', 'Medtr6g017105' => 'mtr', 'MELO3C003324.2' => 'cme', 'MELO3C005246.2' => 'cme', 'MELO3C012207.2' => 'cme', 'MELO3C018298.2' => 'cme', 'MELO3C022085.2' => 'cme', 'Migut.D00871' => 'egut', 'Migut.D01951' => 'egut', 'Migut.E00526' => 'egut', 'Migut.F00342' => 'egut', 'Migut.H00531' => 'egut', 'Migut.K00861' => 'egut', 'Migut.L01103' => 'egut', 'MSTRG.12229' => 'ama', 'MSTRG.13645' => 'ama', 'MSTRG.23824' => 'ama', 'MSTRG.2941' => 'ama', 'Nitab4.5_0000137g0170' => 'nta', 'Nitab4.5_0000538g0130' => 'nta', 'Nitab4.5_0000538g0140' => 'nta', 'Nitab4.5_0000716g0050' => 'nta', 'Nitab4.5_0001324g0090' => 'nta', 'Nitab4.5_0001739g0020' => 'nta', 'Nitab4.5_0002521g0040' => 'nta', 'Nitab4.5_0004193g0030' => 'nta', 'Nitab4.5_0004705g0040' => 'nta', 'Nitab4.5_0005541g0060' => 'nta', 'Nitab4.5_0005541g0080' => 'nta', 'Nitab4.5_0005803g0070' => 'nta', 'Nitab4.5_0023219g0010' => 'nta', 'Nn1g01460' => 'nnu', 'Nn3g17688' => 'nnu', 'Nn4g23694' => 'nnu', 'Nn4g24492' => 'nnu', 'Nn6g33504' => 'nnu', 'Oeu019797.1' => 'oeu', 'Oeu021787.1' => 'oeu', 'Oeu022589.1' => 'oeu', 'Oeu024103.1' => 'oeu', 'Oeu024105.1' => 'oeu', 'Oeu025117.1' => 'oeu', 'Oeu027912.1' => 'oeu', 'Oeu049329.1' => 'oeu', 'Oeu061645.1' => 'oeu', 'Os02g0642300' => 'osa', 'Os03g0717200' => 'osa', 'Os04g0533500' => 'osa', 'Os08g0101700' => 'osa', 'Os08g0384000' => 'osa', 'Os10g0118800' => 'osa', 'Os10g0504200' => 'osa', 'Peaxi162Scf00019g01111' => 'pax', 'Peaxi162Scf00064g01322' => 'pax', 'Peaxi162Scf00064g01323' => 'pax', 'Peaxi162Scf00086g00616' => 'pax', 'Peaxi162Scf00367g00727' => 'pax', 'Peaxi162Scf01169g00017' => 'pax', 'Peaxi162Scf01169g00018' => 'pax', 'Peaxi162Scf01464g00028' => 'pax', 'PGR004G1914' => 'pgr', 'PGR042G0129' => 'pgr', 'PGR042G2450' => 'pgr', 'PGR119G2464' => 'pgr', 'PGR142G2783' => 'pgr', 'PGR142G4448' => 'pgr', 'PGSC0003DMG400000803' => 'stu', 'PGSC0003DMG400001180' => 'stu', 'PGSC0003DMG400014340' => 'stu', 'PGSC0003DMG400022792' => 'stu', 'PGSC0003DMG400022793' => 'stu', 'PGSC0003DMG400022800' => 'stu', 'Phvul.001G139300' => 'pvu', 'Phvul.002G182100' => 'pvu', 'Phvul.003G014500' => 'pvu', 'Phvul.003G014600' => 'pvu', 'Phvul.003G025900' => 'pvu', 'Phvul.004G072300' => 'pvu', 'Phvul.004G116800' => 'pvu', 'Phvul.007G069600' => 'pvu', 'Potri.004G103800' => 'ptr', 'Potri.008G115200' => 'ptr', 'Potri.008G115300' => 'ptr', 'Potri.008G138300' => 'ptr', 'Potri.010G102400' => 'ptr', 'Potri.010G131100' => 'ptr', 'Potri.012G141000' => 'ptr', 'Potri.015G143700' => 'ptr', 'Potri.017G111700' => 'ptr', 'Pp3c16_7180' => 'ppa', 'Pp3c23_400' => 'ppa', 'PRCOL_00005407' => 'pco', 'Prupe.1G304000' => 'ppe', 'Prupe.1G336700' => 'ppe', 'Prupe.1G336800' => 'ppe', 'Prupe.2G294100' => 'ppe', 'Prupe.3G240600' => 'ppe', 'Psat1g061040' => 'psa', 'Psat5g007560' => 'psa', 'Psat6g050480' => 'psa', 'Psat6g050520' => 'psa', 'Psat6g199480' => 'psa', 'Psat7g083200' => 'psa', 'PSO017G6177' => 'pso', 'PSO063G0314' => 'pso', 'PSO447G0137' => 'pso', 'PSO478G2261' => 'pso', 'PSO478G3297' => 'pso', 'PSO478G3520' => 'pso', 'PSO541G2542' => 'pso', 'PSO675G5724' => 'pso', 'PSO782G0988' => 'pso', 'PSO782G2499' => 'pso', 'QL01p000992' => 'qlo', 'QL01p001005' => 'qlo', 'QL01p010389' => 'qlo', 'QL02p053002' => 'qlo', 'QL03p038774' => 'qlo', 'QL03p038796' => 'qlo', 'QL09p014238' => 'qlo', 'QL93p1873_0068' => 'qlo', 'RcHm_v2.0_Chr1g0377221' => 'rch', 'RcHm_v2.0_Chr1g0377231' => 'rch', 'RcHm_v2.0_Chr2g0163271' => 'rch', 'RcHm_v2.0_Chr4g0436011' => 'rch', 'RcHm_v2.0_Chr4g0442131' => 'rch', 'RcHm_v2.0_Chr4g0442141' => 'rch', 'Rhsim03G0180700' => 'rsi', 'Rhsim04G0169800' => 'rsi', 'Rhsim04G0170000' => 'rsi', 'Rhsim09G0113300' => 'rsi', 'Rhsim10G0064200' => 'rsi', 'Sabra04G0077600' => 'sbr', 'Sabra08G0087100' => 'sbr', 'Sabra08G0087200' => 'sbr', 'Sabra10G0075200' => 'sbr', 'Sabra10G0099900' => 'sbr', 'Sabra12G0105800' => 'sbr', 'Sabra15G0153400' => 'sbr', 'SalBow1G4334' => 'sbo', 'SalBow1G5074' => 'sbo', 'SalBow2G1773' => 'sbo', 'SalBow4G2248' => 'sbo', 'SalBow4G2383' => 'sbo', 'SalBow6G1586' => 'sbo', 'SalBow8G1299' => 'sbo', 'Sc10g0001350' => 'sci', 'Sc10g0004900' => 'sci', 'Sc14g0007570' => 'sci', 'Sc17g0004210' => 'sci', 'Sc19g0001520' => 'sci', 'Sed0002693' => 'sed', 'Sed0005966' => 'sed', 'Sed0007218' => 'sed', 'Sed0024918' => 'sed', 'Sed0025868' => 'sed', 'Sed0026262' => 'sed', 'SEGI_05958' => 'sgi', 'SEGI_09654' => 'sgi', 'SEGI_15889' => 'sgi', 'SEGI_25555' => 'sgi', 'SEGI_27386' => 'sgi', 'SEGI_33612' => 'sgi', 'SEGI_41072' => 'sgi', 'SGA_v2.0_scaffold16G07875' => 'sas', 'SGA_v2.0_scaffold16G07877' => 'sas', 'SGA_v2.0_scaffold23G10112' => 'sas', 'SGA_v2.0_scaffold44G16721' => 'sas', 'SGA_v2.0_scaffold62G21547' => 'sas', 'SGA_v2.0_scaffold799G53616' => 'sas', 'SHI04275' => 'shi', 'SHI13786' => 'shi', 'SHI30162' => 'shi', 'SHI39776' => 'shi', 'SMO165G0080' => 'smo', 'SMO340G0028' => 'smo', 'Solyc01g005140.3' => 'sly', 'Solyc01g005150.3' => 'sly', 'Solyc02g065580.3' => 'sly', 'Solyc03g025840.3' => 'sly', 'Solyc05g009950.3' => 'sly', 'Sopen01g001170' => 'spe', 'Sopen01g001180' => 'spe', 'Sopen02g015770' => 'spe', 'Sopen03g004650' => 'spe', 'Sopen05g005760' => 'spe', 'Sp1g13170' => 'spa', 'Sp1g22590' => 'spa', 'Sp6g14530' => 'spa', 'Sp7g03290' => 'spa', 'Sp7g23600' => 'spa', 'TAR371G0667' => 'tar', 'TAR374G0250' => 'tar', 'TAR374G0813' => 'tar', 'TAR374G0903' => 'tar', 'TAR375G0266' => 'tar', 'TAR629G0689' => 'tar', 'TAR629G2903' => 'tar', 'THA.LOC104805554' => 'tha', 'THA.LOC104811982' => 'tha', 'THA.LOC104823583' => 'tha', 'Thecc.02G305200' => 'tca', 'Thecc.02G305300' => 'tca', 'Thecc.02G362700' => 'tca', 'Thecc.03G176300' => 'tca', 'Thecc.03G176400' => 'tca', 'Thecc.04G139100' => 'tca', 'Thhalv10008642m.g' => 'esa', 'Thhalv10008705m.g' => 'esa', 'Thhalv10014551m.g' => 'esa', 'Thhalv10026122m.g' => 'esa', 'Thhalv10027908m.g' => 'esa', 'TPR.G14347' => 'tpr', 'TPR.G25083' => 'tpr', 'TPR.G2698' => 'tpr', 'TPR.G34561' => 'tpr', 'TPR.G34571' => 'tpr', 'TPR.G5096' => 'tpr', 'TWI14G0301' => 'twi', 'TWI74G0070' => 'twi', 'TWI75G0512' => 'twi', 'TWI75G1173' => 'twi', 'TWI77G0078' => 'twi', 'TWI77G0699' => 'twi', 'unitig_0.g2482' => 'ugi', 'unitig_37.g12523' => 'ugi', 'unitig_748.g8407' => 'ugi', 'vmacro05577' => 'vma', 'vmacro06682' => 'vma', 'vmacro08576' => 'vma', 'vmacro10521' => 'vma', 'VMungo0464G0562' => 'vmu', 'VMungo0464G1892' => 'vmu', 'VMungo0720G3041' => 'vmu', 'VMungo1215G2058' => 'vmu', 'VMungo1215G2646' => 'vmu', 'Zm00001eb042480' => 'zma', 'Zm00001eb044100' => 'zma', 'Zm00001eb055220' => 'zma', 'Zm00001eb075580' => 'zma', 'Zm00001eb185950' => 'zma', 'Zm00001eb198680' => 'zma', 'Zm00001eb248610' => 'zma' ) $gf_id = 'HOM05D000998' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000998' ) $data_identifier = 'HOM05D000998' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 2, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 6, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 5, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb248610' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1